SDCSB began in 2005 as the San Diego Consortium for Systems Biology to bring together scientists across disciplines and institutions, promote collaborative research and training, and to support the exchange of ideas and resources.

NCSB LogoIn 2010, we became one of the National Centers for Systems Biology funded by the National Institute of General Medical Sciences (NIGMS) (Grant #GM085764). SDCSB comprises activities in (i) scientific research, (ii) scientific outreach, and (iii) educational outreach.

We welcome you to participate in the revolution that is gripping the biological and biomedical sciences, catalyzed by unprecedented measurement capabilities and computational analysis and modeling tools. Start by exploring this website, participate in our workshops, symposia and research meetings, and let us know about good ideas for new research and outreach activities that SDCSB can support.

SDCSB Directors,
Alexander Hoffmann
Jeff Hasty
Trey Ideker

Visualizing Complex Networks using New Cytoscape v3.0

Cytoscape3b
Computational biologists and computer scientists at UC San Diego have just released version 3.0 of Cytoscape, the leading open source visualization platform supporting systems biology. New features include edge bending and bundling visualizations, network annotations, advanced searching, node grouping, and an app store. Cytoscape v3.0 is a collaboration with UC San Francisco, University of Toronto, Pasteur Institute, Broad Institute, Sloan Kettering, and the Institute for Systems Biology, and funded by the NIH.

Download Cytoscape 3.0
Using gene position to test the “histone code”

ideker2012In a novel use of gene knockout technology, researchers at the University of California, San Diego School of Medicine tested the same gene inserted into 90 different locations in a yeast chromosome – and discovered that while the inserted gene never altered its surrounding chromatin landscape, differences in that immediate landscape measurably affected gene activity.

Read in Cell Reports (2013)

SDCSB Investigator Suckjoon Jun receives award

March 7, 2013

SDCSB investigator Suckjoon Jun was awarded a $1.6 million grant from the Paul G. Allen Family Foundation, becoming the first UC San Diego researcher to receive an award from the foundation.

Jun was one of five announced winners in early March for projects ...

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