12/4/12 Network Analysis & Cytoscape
Tuesday, December 4th, 2012 – 9:00AM-12:00PM
Salk Institute, Frederic de Hoffmann Auditorium
San Diego Center for Systems Biology (SDCSB)
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration and visualization. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases. Plugins may be developed by anyone using the Cytoscape open API based on Java™ technology and plugin community development is encouraged. Most of the plugins are freely available.
NEW THIS YEAR: We will briefly show and discuss new Cytoscape features: Custom Node Graphics and Attribute Equations.
Additional information on Cytoscape can be found on the Cytoscape home page, the Cytoscape Wiki, or Wikipedia.
Participants should bring their own laptop with an installed copy of Cytoscape (the workshop will cover installation for anyone having difficulties), as well as your own data to experiment with. Finally, please click here to link to suggested reading before the workshop.
Tutorial: click here
Presentation Slides: click here
Contact: Keiichiro Ono, email@example.com
Cytoscape is funded by the National Resource for Network Biology (NRNB, an NIH Division of Biomedical Technology), Bioinformatics, and Computational Biology (BBCB) and Biomedical Technology Research Center (BTRC). NRNB is funded by grant GM103504.
Online Registration Required, Open until November 30, 2012
*No Show Policy*
While we do not charge a fee to attend this event, these programs would not be sustainable and available to all wanting to attend, unless all registrants abide by the 72 hour cancellation notice policy. A no-show will also limit your ability to book our events in the future.
Thank you in advance for your cooperation.
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With many thanks for the support from:
Santa Cruz Biotechnologies