Conferences & Workshops

Host-Pathogen Interactions: Circuits to Systems Symposium
January 23, 2017, from 8:30 am – 7 pm
Sanford Consortium for Regenerative Medicine
Organized by SDCSB, FluOMICS and FluDyNeMo
Register for the event here

Cytoscape Workshop
January 24, 2017, from 9:30 am – 12:00 pm
UC San Diego – BRF2, room 2A03
Organized by Barry Demchak
Register for the event here

Q-Bio Hawaii
February 21-24, 2017
Grand Hyatt Kauai Resort & Spa
Register for the event here

IP Workshop
March 16, 2017, from 1:30 pm – 6:00 pm
Sanford Consortium for Regenerative Medicine
Organized by Kamala Janiyani
Registration begins in Winter 2017

Math Modeling Workshop
March 27-31, 2017, from 10:00 am – 12:00 pm
UC San Diego, Bonner Hall room 2130
Organized by Dr. Lev Tsimring
Registration for the event here

Spring Systems-To-Synthesis (S2S) Meeting
April 6, 2017, from 1:30 – 6:00 pm
The Village 15 at UC San Diego
Registration begins in Spring 2017

Weekly Events

Genetics, Bioinformatics and Systems Biology Colloquium (2016-17)

qBio Seminar Series (2016-17)

Systems Biology Career Development Seminars (Spring 2017)

Monthly Events

San Diego Bioinformatics Users Series (SDBUS)

Systems Biology Club

Cytoscape Workshop 2017

Tuesday, January 24, 2017 from 9:30 am – 12:00 pm

UC San Diego Campus, BRF2 room 2A03

Organized by Barry Demchak

Please visit here to register

 


Cytoscape is the most popular software for analyzing and visualizing molecular networks and biological pathways. Cytoscape has many powerful features for integrating these networks with annotations, gene expression profiles and other state data.

In this clinic, the Cytoscape development team from Trey Ideker’s lab will try something completely new. Attendees at our recent workshops have requested an instructional format where individuals can work through Cytoscape tutorials and pose questions along the way that could be directly addressed by Cytoscape tutors and developers.

In this Winter clinic, we will do exactly that – start with Cytoscape installation and work our way through the online tutorials available at http://opentutorials.cgl.ucsf.edu/index.php/Portal:Cytoscape3. Anyone interested in hearing the presentation, working the tutorials, and posing their own Cytoscape-related problems is welcome to attend.

 

Preparation

If possible, bring a PC or Mac with Cytoscape already installed or at least attempted.

 

Schedule

9:30 am to 10:15 am – Barry Demchak – Welcome, Startup and Installation
10:15 am to 11:45 am – Cytoscape Team – Work through Cytoscape tutorials

 

No Show Policy

While we do not charge a fee to attend this event, these and our other events would be unsustainable unless those unable to attend cancelled their reservations no later than 2 days before the event. A no-show can limit your ability to book our events in the future. Thank you in advance for your cooperation.

 

Parking

Parking at UC San Diego’s School of Medicine is available to all faculty, staff, and visitors. The closest parking lots are P602, P603, and the Gilman Parking structure. A map of BRF2 and the parking lots and can be seen here. Hourly rates are posted at meters; cards are accepted. If using the UC San Diego Shuttle, exit at Gilman and Meyers and walk south towards School of Medicine.