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Genetics, Bioinformatics and Systems Biology Colloquium
Thursdays, 12:00 pm – 1:00 pm
UC San Diego, Powell-Focht Bioengineering Hall, Fung Auditorium
Complete schedule here

The SDCSB’s Quarterly Systems-to-Synthesis Meeting (Spring 2017)

Thursday, April 6, 2017, from 1:30 pm to 6:00 pm

UC San Diego – Medical Education & Telemedicine (MET) rooms 143 & 145

 

The SDCSB’s Quarterly Systems-to-Synthesis Meeting will feature short talks and posters by graduate students and postdoctoral fellows from labs throughout the SDCSB, including a happy hour. All faculty members and trainees – graduate students, postdoctoral fellows, scientists and staff members – working on SDCSB-related projects are expected to attend.

This meeting is open to the public but seats are limited so be sure to register early.

 

Schedule
1:00 Registration
1:30 Welcome
1:40 Juan Carlos Jado Rodriguez (Postdoc in Elizabeth Winzeler’s lab)
Using in vitro evolution and whole genome sequencing in a haploid cell line to characterize the anti-cancer drug resistome
2:00 Taishi Tonooka (Postdoc in Jeff Hasty’s lab)
Artificial gene network in cell extract
2:20 Elayanambi Sundaramoorthy (Postdoc in Eric Bennett’s lab)
Lost in Translation: ZNF598 and RACK1 function within the ribosome-associated quality control pathway by mediating regulatory ubiquitylation of 40S ribosomal proteins
2:40 Joseph Larkin (Postdoc in Gurol Suel’s lab)
Coupling between distant biofilms and emergence of nutrient time-sharing
3:00 Coffee break
3:20 Flash talks
4:00 Poster session / happy hour
5:30 Announce prize winners

 

Flash Talks and Poster Presenters

The presentation order for the flash talk and corresponding poster numbers is as follows:

 

  1. Dylan Skola – A high-order Markov model predicts transcription factor ensembles
  2. Elayanambi Sundaramoorthy* – Lost in Translation: ZNF598 and RACK1 function within the ribosome-associated quality control pathway by mediating regulatory ubiquitylation of 40S ribosomal proteins
  3. Elisha Ho – Decoupling growth and defense in the yeast stress response implicates transcript repression in translational reallocation
  4. Jenhan Tao – Investigating the Activity of AP-1 Transcription Factors in Macrophages
  5. Juan Carlos Jado Rodriguez* – Using in vitro evolution and whole genome sequencing in a haploid cell line to characterize the anti-cancer drug resistome
  6. Justin Huang – Evaluation of molecular interaction databases for identification of tumor subtypes
  7. Liyang Xiong – Bacterial Pattern Formation due to Contact-dependent Inhibition
  8. Miao Yu – Mapping of Long-range Chromatin Interactions by Proximity Ligation Assisted ChIP-seq (PLAC-seq)
  9. Michelle Dow – Comparative genomic analysis with mouse models of Hepatocellular carcinoma (HCC)
  10. Nancy Yuan – Species-Independent Attraction to Biofilms through Electrical Signaling
  11. Stephen Soonthornvacharin – Systems-based Analysis of RIG-I-dependent Signaling Identifies KHSRP as an Inhibitor of RIG-I Receptor Activation
  12. Taishi Tonooka* – Artificial gene network in cell extract
  13. Yarui Diao – A tiling-deletion based genetic screen for high throughput identification of cis-regulatory elements in mammalian cells

 

 

* = presenter is giving a 20 minute talk in lieu of a flash talk.

 

No Show Policy

While we do not charge a fee to attend this event, these and our other events would be unsustainable unless those unable to attend cancelled their reservations no later than 2 days before the event. A no-show can limit your ability to book our events in the future. Thank you in advance for your cooperation.

Parking

Parking at UC San Diego’s School of Medicine is available to all faculty, staff, and visitors. The closest parking lots are P602, P603, and the Gilman Parking structure. A map of MET and the nearby parking lots can be viewed here. Hourly rates are posted at meters; cards are accepted. If using the UC San Diego Shuttle, exit at Gilman and Meyers and walk south towards School of Medicine.